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Perl Entrez Gene Parser

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Rating: 3.16/5
Rated by: 19 user(s)
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 Downloads: 210
 Developer: Mingyi Liu | More scripts by this producer
 License(s): GPL (GNU Public License)
 Programming Language: Perl
 Database Support: none
 Platform: Windows/Linux/Mac OS/BSD/Solaris
 Last Updated: 6th of December 2007, 08:58 GMT
 Category: HOME :: Scientific/Engineering :: Bio-Informatics
 Read user reviews (0) Add a review Refer to friend Subscribe

Perl Entrez Gene Parser description Download

This program is a parser that abstract a data structure from a given Entrez Gene record, and users of the parser can decide what to do/extract from the data structure.


Perl Entrez Gene Parser project provides Perl parsers for NCBI's Entrez Gene based on regular expression, Parse::RecDescent, Parse::Yapp and Perl-byacc. Some can parse human genome annotations in minutes. Documentation and user guides are provided.


For this purpose, we consider several automatic parser generators as well as the venerable Perl5 regular expressions. The tools we considered are: Parse::RecDescent, Parse::Yapp, Perl-byacc, Text::Balanced and Regex.


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