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  • Home > Scripts > Scientific/Engineering > Bio-Informatics

    KEGG2SBML 1.5.0

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    SBML Development Team | More scripts
    sbml.org
    LGPL - GNU Lesser General Public License 

    Windows / Linux / Mac OS / BSD / Solaris
    N/A
    Perl
    December 19th, 2009, 21:53 GMT [view history]
    C: \ Scientific/Engineering \ Bio-Informatics

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    KEGG2SBML description

    This is a Perl program to convert KEGG (Kyoto Encyclopedia of Genes and Genomes) Pathway database files to SBML using the KEGG LIGAND database

    The Systems Biology Markup Language (SBML) is an XML-based description language for representing computational models in systems biology and bio-informatics.

    KEGG2SBML's capabilities are currently limited to converting only KEGG Metabolic Pathway files and not other types of KEGG files.

    KEGG2SBML can convert KEGG Pathway Database Release 46.0 or later. (Past releases of KEGG Pathway Database have not been tested and may not be converted by KEGG2SBML.)

    It can generate SBML Level 1 and Level 2 (Version 1), with or without annotations used by CellDesigner and SBML Level 2 Version 2 and Level 2 Version 3 without annotations.

    What's New in This Release: [ read full changelog ]

    · Changes in parsing KEGG Pathway.
    · Changes in parsing KEGG LIGAND.
    · Changes in writing SBML.
    · KGML is no longer used from this release.



    TAGS:

    file conversion | change format | convert KEGG file | convert | KEGG | file

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