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General Viterbi Algorithm description |
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General Viterbi Algorithm script runs Viterbi algorithm given valid parameters and returns optimal path into a file. General implementation of matlab version of Viterbi algorithm was specifically written for gene structure finding problem. However, it can be modified to suit the goal of a user.
It allows the modelling of glucose insulin with neural networks.
Input:
- Transition Probability Matrix
- Emission Probability Matrix
- Initial Probability Matrix
- States Matrix (ie. Exon,Intron, Intergenic, etc.)
- Sequence File Name <-- Optional
- Output: Most probable state sequence ) into output.txt
Requirements:
· MATLAB Release: R14
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